PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00002451.1.g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family FAR1
Protein Properties Length: 1147aa    MW: 132414 Da    PI: 8.457
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00002451.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1392.6e-1249130391
                            FAR1   3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkl 81 
                                      ++YA ++G  +r+++++k+  +g  +  ++vCs+  + ++ k++     ++++++ tgC  +++  +++dg++++t++
  FANhyb_rscf00002451.1.g00001.1  49 CKDYAMKTGWAIRTRSNSKR--DGALKYVQLVCSRAFRGKSLKES-----EPKSSQITGCSTRIRAVLNSDGEYKLTTI 120
                                     579**********9987766..999*********98776665555.....89999************************ PP

                            FAR1  82 eleHnHelap 91 
                                      leHnH+l+p
  FANhyb_rscf00002451.1.g00001.1 121 CLEHNHHLCP 130
                                     ********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.5E-1049130IPR004330FAR1 DNA binding domain
PfamPF105511.1E-32250343IPR018289MULE transposase domain
PROSITE profilePS5096610.497600636IPR007527Zinc finger, SWIM-type
PfamPF044341.3E-7607634IPR007527Zinc finger, SWIM-type
SMARTSM005756.1E-7611638IPR006564Zinc finger, PMZ-type
SuperFamilySSF540011.61E-249461125No hitNo description
PROSITE profilePS5060010.1979601100IPR003653Ulp1 protease family, C-terminal catalytic domain
PfamPF029021.9E-69981119IPR003653Ulp1 protease family, C-terminal catalytic domain
Gene3DG3DSA:3.30.310.1301.2E-610051094No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006508Biological Processproteolysis
GO:0008234Molecular Functioncysteine-type peptidase activity
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1147 aa     Download sequence    Send to blast
MDGNNTSQVP YVEEDDLIAS NEVDLELDDR DIPKTGMIFS CYGVMYDYCK DYAMKTGWAI  60
RTRSNSKRDG ALKYVQLVCS RAFRGKSLKE SEPKSSQITG CSTRIRAVLN SDGEYKLTTI  120
CLEHNHHLCP EATRRIRQYR GLDQHSKHRF SSNQDAGVRP SKNIHAILTE KGGYTNLGYT  180
VKDARNFINK RTTLKLQSGD ADALHRYFVM MQKNNPEFFY SIDVDDEGRL RNVFWADARS  240
RAACEDFGDV ITFDTTCLTN KYDMPFAPFV GVNHHGQSIL LGCGLLCDET TMSFIWLYEE  300
WKKCIKGKSP NAIITDQCAS MKNAIVVVFP DAKHRWCLWH IMEKIPKKLR HYKKSYEGVK  360
SSMTDAVYEA LSIDDFEREW TSMREKYFPD GDNWHYKKSY EGIKSSMTDA VYEALSIDDF  420
EREWTSMREK YFPDGDNWLD ELYKERHRWV PIFLKDKFWV GMSTTQRSKS INAFFDKFVK  480
STTSLKIFVE QYGAAMADKI EKEEQEEFNT LYRSIEPFSG FKFEKQFRDA YTNVEFKEFQ  540
DELRANVYCN SWPAKEEGAR CTHKVMESRF KKKRKGGRKQ KVFLKASVTK ELKYKGPICQ  600
HVLFDKDSND IKCTCRLFEF RGILCRHIIS VLIQREVATV SDKYVLTRWK KSLKRKYSLI  660
KGCYDDPKFK EVRTLQNKML EAFHDLVNFV EGKMQTDIVL QGITELKAKV IQSKPVPNLK  720
VDSSSLEEPE TTKKILDPKV VKRVGRPTFK RKISKAEEVI QRAKKRRYNR KVTQSTMTKK  780
LSKNTVEYEN GCDIGVNYST SPHVYDPPKT PTMSGNIKST AFRVDSTPIS NSGYPITPPN  840
FYTHGSNLST NLSGQIFHNV KMEYDIGGDC IVDQDAASIN NLSTGVCSFS QLLNMVSSVG  900
STVPKSSIGY MEVREQCGTN GTTTSMSILE RQVLDYIFDR SLLKQKKGQV EETLSQIDGF  960
SIKRDEIIVL QDHSWLGDQV LNMYIKLINL DRETNDRYVF LTFLALIFPV CLHSHWVAFA  1020
IDLMKHKIEI LDTLYDKILP GLDEIIYGVL IILEELSKDF GEVIFNHKMY STDTIPLAKI  1080
VRQENTWDCG VLLIKVMESW YGKITTEIDK DMADKYRLDI ATSIVLSHHN ELRNQIIEKA  1140
TERSTNL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1749766KRKISKAEEVIQRAKKRR
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3450622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-97FAR1-related sequence 5